MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.3359341123705777
cnr3.6768672321173326
efc0.6133562627192375
fber61.76721954345703
fwhmavg4.051713333333333
fwhmx3.90332
fwhmy4.18085
fwhmz4.07097
icvscsf0.21515369032435425
icvsgm0.44400024845035957
icvswm0.34084606122528616
inumed1.1331738233566284
inurange0.3612121343612671
qi10.0
qi20.0007174576911281416
rpvecsf25.099710526824012
rpvegm12.965197741626836
rpvewm19.522876078462748
sizex180
sizey256
sizez256
snrcsf2.2160354381570544
snrgm10.135212660068671
snrtotal9.079468976995036
snrwm14.887158832759386
snrdcsf7.672607145543887
snrdgm18.740679116198347
snrdtotal18.5531108962491
snrdwm29.246046427005066
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk5.768125780284288
summarybgmad22.401409149169922
summarybgmean72.31745910644531
summarybgmedian64.70606231689453
summarybgn2886801.0
summarybgp0537.50921630859375
summarybgp95135.3386688232422
summarybgstdv32.16948318481445
summarycsfk0.07207915901372086
summarycsfmad120.94644165039062
summarycsfmean277.5545349121094
summarycsfmedian262.35333251953125
summarycsfn16350.0
summarycsfp05109.8349594116211
summarycsfp95490.79002532958987
summarycsfstdv118.38497924804688
summarygmk0.11704122363439984
summarygmmad61.523921966552734
summarygmmean640.2453002929688
summarygmmedian640.8095092773438
summarygmn23755.0
summarygmp05536.0684631347656
summarygmp95744.8353576660156
summarygmstdv63.22472381591797
summarywmk1.4370874996778245
summarywmmad59.14876174926758
summarywmmean1003.3428344726562
summarywmmedian1000.0248413085938
summarywmn169036.0
summarywmp05898.6393585205078
summarywmp951117.5265502929688
summarywmstdv67.17345428466797
tpmoverlapcsf0.22100543975830078
tpmoverlapgm0.52545565366745
tpmoverlapwm0.5605771541595459
wm2max0.6441386214044443

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5sum8a1aea31fddd7c868531495c3a4685a7
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.