MRIQC: individual T1w report

Summary

Subject ID: 019_ControlPre.
Date and time: 2018-05-06, 23:40.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.3359341123705777
cnr			3.6768672321173326
efc			0.6133562627192375
fber			61.76721954345703
fwhm	avg		4.051713333333333
fwhm	x		3.90332
fwhm	y		4.18085
fwhm	z		4.07097
icvs	csf		0.21515369032435425
icvs	gm		0.44400024845035957
icvs	wm		0.34084606122528616
inu	med		1.1331738233566284
inu	range		0.3612121343612671
qi	1		0.0
qi	2		0.0007174576911281416
rpve	csf		25.099710526824012
rpve	gm		12.965197741626836
rpve	wm		19.522876078462748
size	x		180
size	y		256
size	z		256
snr	csf		2.2160354381570544
snr	gm		10.135212660068671
snr	total		9.079468976995036
snr	wm		14.887158832759386
snrd	csf		7.672607145543887
snrd	gm		18.740679116198347
snrd	total		18.5531108962491
snrd	wm		29.246046427005066
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	5.768125780284288
summary	bg	mad	22.401409149169922
summary	bg	mean	72.31745910644531
summary	bg	median	64.70606231689453
summary	bg	n	2886801.0
summary	bg	p05	37.50921630859375
summary	bg	p95	135.3386688232422
summary	bg	stdv	32.16948318481445
summary	csf	k	0.07207915901372086
summary	csf	mad	120.94644165039062
summary	csf	mean	277.5545349121094
summary	csf	median	262.35333251953125
summary	csf	n	16350.0
summary	csf	p05	109.8349594116211
summary	csf	p95	490.79002532958987
summary	csf	stdv	118.38497924804688
summary	gm	k	0.11704122363439984
summary	gm	mad	61.523921966552734
summary	gm	mean	640.2453002929688
summary	gm	median	640.8095092773438
summary	gm	n	23755.0
summary	gm	p05	536.0684631347656
summary	gm	p95	744.8353576660156
summary	gm	stdv	63.22472381591797
summary	wm	k	1.4370874996778245
summary	wm	mad	59.14876174926758
summary	wm	mean	1003.3428344726562
summary	wm	median	1000.0248413085938
summary	wm	n	169036.0
summary	wm	p05	898.6393585205078
summary	wm	p95	1117.5265502929688
summary	wm	stdv	67.17345428466797
tpm	overlap	csf	0.22100543975830078
tpm	overlap	gm	0.52545565366745
tpm	overlap	wm	0.5605771541595459
wm2max			0.6441386214044443

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	8a1aea31fddd7c868531495c3a4685a7
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.